PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000263900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 135aa    MW: 15579.3 Da    PI: 10.0878
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000263900genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.21.2e-3168126159
                    ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                    ldDgy+WrKYGqK vk+++fprsYYrCt++gC vkk+v+r ++d+ +v++tY g H+h+
  MDP0000263900  68 LDDGYRWRKYGQKFVKNNKFPRSYYRCTHRGCIVKKQVQRHSKDEGIVVTTYDGIHTHR 126
                    59********************************************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-3253126IPR003657WRKY domain
SuperFamilySSF1182902.48E-2960127IPR003657WRKY domain
PROSITE profilePS5081129.19563128IPR003657WRKY domain
SMARTSM007741.3E-3568127IPR003657WRKY domain
PfamPF031069.9E-2669126IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MDQNNQIFFL GSSTTSPAFL TCSANQSSFP HFRSDRSEGL MKSGGKEGDK ESKKHKYAFQ  60
TRSQVDILDD GYRWRKYGQK FVKNNKFPRS YYRCTHRGCI VKKQVQRHSK DEGIVVTTYD  120
GIHTHRVDEN SAGNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-2758125774Probable WRKY transcription factor 4
2lex_A4e-2758125774Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008346674.14e-63PREDICTED: probable WRKY transcription factor 75
RefseqXP_008374228.14e-63PREDICTED: probable WRKY transcription factor 75
SwissprotQ9S7639e-40WRK45_ARATH; Probable WRKY transcription factor 45
TrEMBLM5WAY91e-49M5WAY9_PRUPE; Uncharacterized protein
STRINGVIT_17s0000g01280.t015e-47(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF115634110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01970.11e-40WRKY DNA-binding protein 45